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Potma Labs Publications

Peer reviewed journal publications

Alba Alfonso-Garcia, Richa Mittal, Eun Seong Lee, and Eric O. Potma, "Biological imaging with coherent Raman scattering microscopy," J. Biomed. Opt. 19(7), 071407 (2014). [pdf]

Jeffrey L. Suhalim, Geraint J. Parfitt, Yilu Xie, Cinti S. De Pavia, Stephen Pflugfelder, Tejas N. Shah, Eric O. Potma, Donald J. Brown, and James V. Jester, "Effect of desiccating stress on mouse meibomian gland function," The Ocular Surface 12, 59-68 (2014). [pdf]

Jordan Brocious and Eric O. Potma, "Lighting up micro-structured materials with four-wave mixing microscopy," Materials Today 16, 344-350 (2013). [pdf]

Richa Mittal, Mihaela Balu, Petra Wilder-Smith, and Eric O. Potma, "Achromatic miniature lens system for coherent Raman scattering microscopy," Biomed. Opt. Express 4, 2196-2206 (2013). [pdf]

Richa Mittal, Mihaela Balu, Tatiana Krasieva, Eric O, Potma, Laila Elkeeb, Christopher B. Zachary, and Petra Wilder-Smith, "Evaluation of stimulated Raman scattering microscopy for identifying squamous cell carcinoma in human skin," Lasers in Surgery and Medicine 45, 496-502 (2013). [pdf]

Jungyun Kim, Chia-Yu Lin, Wendong Xing, Martha L. Mecartney, Eric O. Potma, and Reginald M. Penner, "Laser annealing of nanocrystalline gold nanowires," ACS Appl. Mat. Interfaces 5, 6808-6814 (2013). [pdf]

Jiri Sebek, Roie Knaanie, Brian Albee, Eric O. Potma, and R. Benny Gerber, "Spectroscopy of the CH-stretching vibrational band of selected organic molecules," J. Phys. Chem. A 117, 7442-7452 (2013). [pdf]

Yang Han, Varun Raghunathan, Ran-ran Feng, Hiroaki Maekawa, Chao-Yu Chung, Yuan Feng, Eric O. Potma, and Nien-Hui Ge, "Mapping molecular orientation with phase sensitive vibrationally resonant sum-frequency generation microscopy," J. Phys. Chem. B 117, 6149-6156 (2013). [pdf]

Pu Wang, Mikhail N. Slipchenko, James Mitchell, Chen Yang, Eric O. Potma, Xianfan Xu, and Ji-Xin Cheng, "Far-field imaging of non-fluorescent species with subdiffraction resolution," Nature Photonics 7, 449-453 (2013). [pdf]

Chao-Yu Chung, J. Boik, and Eric O. Potma, "Biomolecular imaging with coherent nonlinear vibrational microscopy," Annu. Rev. Phys. Chem. 64, 77-99 (2013). [pdf]

Chao-Yu Chung, Julie Hsu, Shaul Mukamel, and Eric O. Potma, "Controlling stimulated coherent spectroscopy and microscopy by a position-dependent phase," Phys. Rev. A 87, 033833 (2013).[pdf]

Wendong Xing, Wenbo Yan, Talin Ayvazian, Yong Wang, Eric O. Potma, Reginald M. Penner, "Electrodeposited light-emitting nanojunctions", Chem. Mat. 25, 623-631 (2013). [pdf]

Tatyana Sheps, Jordan Brocious, Brad L. Corso, O. Tolga Gül, Desiré Whitmore, Göksel Durkaya, Eric O. Potma, and Philip G. Collins, "Four-wave mixing microscopy with electronic contrast of individual carbon nanotubes," Phys. Rev. B 86, 235412 (2012). [pdf]

Xuejun Liu, Yong Wang, and Eric O. Potma, "A dual-color plasmonic focus for surface-selective four-wave mixing," Appl. Phys. Lett. 101, 081116 (2012). [pdf]

Yong Wang, Xuejun Liu, Aaron R. Halpern, Kyunghee Cho, Robert M. Corn, and Eric O. Potma, "Wide-field, surface-sensitive four-wave mixing microscopy of nanostructures," Appl. Opt. 51, 3305-3312 (2012). [pdf]

Jeffrey L. Suhalim, Chao-Yu Chung, Magnus B. Lilledahl, Ryan S. Lim, Moshe Levi, Bruce J. Tromberg, and Eric O. Potma, "Characterization of cholesterol crystals in atherosclerotic plaques using stimulated  Raman scattering and second-harmonic generation microscopy," Biophys. J. 102, 1988-1995 (2012). [pdf]

Jeffrey L. Suhalim, John C. Boik, Bruce J. Tromberg, and Eric O. Potma, "The need for speed," J. Biophoton. 5, 387-396 (2012). [pdf]

Ryan S. Lim, Jeffrey L. Suhalim, Shinobu Miyazaki-Anzai, Makoto Miyazaki, Moshe Levi, Eric O. Potma, and Bruce J. Tromberg, "Identification of cholesterol crystals in plaques of atherosclerotic mice using hyperspectral CARS imaging", J. Lipid Res. 52 ,2177-2186 (2011). [pdf]

Varun Raghunathan, Alexei Nikolaenko, Chao-Yu Chung, and Eric O. Potma, "Amplitude and phase of shaped nonlinear excitation fields in a four-wave mixing microscope", Appl. Phys. Lett. 99, 171114 (2011). [pdf]

Liat Pele, Jiri Sebek, Eric O. Potma, and R. Benny Gerber, "Raman and IR spectra of butane: Anharmonic calculations and interpretation of room temperature spectra", Chem. Phys. Lett. 515, 7-12 (2011). [pdf]

Varun Raghunathan, Yang Han, Olaf Korth, Nien-Hui Ge, and Eric O. Potma, "Rapid vibrational imaging with sum frequency generation microscopy", Opt. Lett. 36, 3891-3893 (2011). [pdf]

Desiré Whitmore, Patrick Z. El-Khoury, Laura Fabris, Ping Chu, Guillermo C. Bazan, Eric O. Potma, V. A. Apkarian, "High sensitivity surface-enhanced Raman scattering in solution using engineered silver nanosphere dimers", J. Phys. Chem. C 115, 15900–15907 (2011) [pdf]

Jiri Sebek, Liat Pele, Eric O. Potma, and R. Benny Gerber, "Raman spectra of long chain hydrocarbons: Anharmonic calculations, experiment and implications for imaging of biomembranes," Phys. Chem. Chem. Phys. 13, 12724-12733 (2011). [pdf]

Yong Wang, Xuejun Liu, Desiré Whitmore, Wendong Xing, and Eric O. Potma, "Remote multi-color excitation using femtosecond propagating surface plasmon polaritons in gold films", Opt. Express 19, 13454-13463 (2011). [pdf]

Xuejun Liu, Yong Wang, and Eric O. Potma, "Surface-mediated four-wave mixing of nanostructures with counterpropagating surface plasmon polaritons", Opt. Lett. 36, 2348-2350 (2011). [pdf]

Yong Wang, Chia-Yu Lin, Alexei Nikolaenko, Varun Raghunathan and Eric O. Potma, "Four-wave mixing microscopy of nanostructures", Adv. Opt. Photon. 3, 1-52 (2011). [link][pdf]

Carole Hayakawa, Eric O. Potma and Vasan Venugopalan, "Electric field Monte Carlo simulations of focal field distributions produced by tightly focused laser beams in tissues", Biomed. Opt. Express 2, 278-290 (2011). [pdf]

Chia-Yu Lin, Jeffrey L. Suhalim, Chyong Nien, Milos D. Miljkovic, Max Diem, James Jester and Eric O. Potma, "Picosecond spectral coherent anti-Stokes Raman scattering (CARS) imaging with principal component analysis of meibomian glands", J. Biomed. Opt. 16 , 021104 (2011). [pdf]
[Read also: Special Issue Editorial]

Varun Raghunathan and Eric O. Potma, "Multiplicative and subtractive focal volume engineering in coherent Raman microscopy", J. Opt. Soc. Am. A 27, 2365-2374 (2010). [pdf]

Maxwell Zimmerley, Rebecca Younger, Tiffany Valenton, David C. Oertel, Jimmie L. Ward and Eric O. Potma, "Molecular orientation in dry and hydrated cellulose fibers: a coherent anti-Stokes Raman scattering microscopy study", J. Phys. Chem. B 114, 10200-10208 (2010). [pdf]

Ryan S. Lim, Adelheid Kratzer, Nicholas P. Barry, Shinobu Miyazaki-Anzai, Makoto Miyazaki, William W. Mantulin, Moshe Levi, Eric O. Potma and Bruce J. Tromberg, "Multimodal CARS microscopy determination of the impact of diet on macrophage infiltration and lipid accumulation on plaque formation in ApoE-deficient mice", J. Lipid Res. 51, 1729-1737 (2010). [pdf]

Mihaela Balu, Gangjun Liu, Zhongping Chen, Bruce J. Tromberg and Eric O. Potma, "Fiber delivered probe for efficient CARS imaging of tissues", Opt. Express 18, 2380-2388 (2010). [pdf]

Tommaso Baldacchini, Maxwell Zimmerley, Chun-Hung Kuo, Eric O. Potma and Ruben Zadoyan, "Characterization of microstructures fabricated by two-photon polymerization using coherent anti-Stokes Raman scattering microscopy", J. Phys. Chem. B 113, 12663-12668 (2009). [pdf] [suppl.]

Maxwell Zimmerley, Chia-Yu Lin, David C. Oertel, Jennifer M. Marsh, Jimmie L. Ward and Eric O. Potma, "Quantitative detection of chemical compounds in human hair with coherent anti-Stokes Raman scattering", J. Biomed. Opt. 14, 044019 (2009). [pdf]

Hyunmin Kim, Tatyana Sheps, Philip G. Collins and Eric O. Potma, "Nonlinear optical imaging of individual carbon nanotubes with four-wave-mixing microscopy", Nano Lett. 9, 2991-2995 (2009). [pdf]

Carole Hayakawa, Vasan Venugopalan, Vishnu Vardhan Krishnamachari and Eric O. Potma, "Amplitude and phase of tightly focused laser beams in turbid media", Phys. Rev. Lett. 103, 043903 (2009). [pdf]

Alexei Nikolaenko, Vishnu Vardhan Krishnamachari and Eric O. Potma, "Interferometric switching of coherent anti-Stokes Raman scattering signals in microscopy", Phys. Rev. A 79, 013823 (2009). [pdf]

Maxwell Zimmerley, Richard A. McClure, Bernard Choi and Eric O. Potma, "Following dimethyl sulfoxide skin optical clearing dynamics with quantitative nonlinear multimodal microscopy", Appl. Opt. 48(10), D79 - D87 (2009). [pdf]

Vishnu Vardhan Krishnamachari and Eric O. Potma,"Multidimensional differential imaging with focus-engineered CARS microscopy", Vib. Spectrosc. 50, 10 - 14 (2009). [pdf]

Hyunmin Kim, Dave K. Taggart, Chengxiang Xiang, Reginald M. Penner and Eric O. Potma, "Spatial control of coherent anti-Stokes emission with height-modulated gold zig-zag nanowires", Nano Lett. 8, 2373-2377 (2008). [pdf]

Hyunmin Kim, Chengxiang Xiang, Aleix G. Guell, Reginald M. Penner and Eric O. Potma,"Tunable two photon-excited luminescence in single gold nanowires fabricated by lithographically patterned nanowire electrodeposition", J. Phys. Chem. C 112, 12721-12727 (2008). [pdf]

Vishnu Vardhan Krishnamachari and Eric O. Potma,"Detecting lateral interfaces with focus-engineered coherent anti-Stokes Raman scattering microscopy ", J. Raman Spectrosc. 39, 593-598 (2008). [pdf]

Vishnu Vardhan Krishnamachari and Eric O. Potma,"Imaging chemical interfaces perpendicular to the optical axis with focus-engineered coherent anti-Stokes Raman scattering microscopy ", Chem. Phys. 341, 81-88 (2007). [pdf]

Vishnu Vardhan Krishnamachari and Eric O. Potma,"Focus-engineered coherent anti-Stokes Raman scattering: A numerical investigation", J. Opt. Soc. Am. A 24, 1138-1147 (2007). [pdf]

Esben Ravn Andresen, Soren Rud Keiding and Eric O. Potma, "Picosecond anti-Stokes generation in a photonic crystal fiber for coherent anti-Stokes Raman scattering interferometry", Opt. Express 14, 7246-7251 (2006). [pdf]

Vishnu Vardhan Krishnamachari, Esben Ravn Andresen, Soren Rud Keiding and Eric O. Potma, "An active interferometer-stabilization scheme with linear phase control", Opt. Express 14, 5210-5215 (2006). [pdf]

Published Conference Proceedings

Mihaela Balu, Gangjun Liu, Zhongping Chen, Bruce J. Tromberg, and Eric O. Potma, "Scheme for efficient fiber-based CARS probe", Proc. SPIE 7569 (SPIE, Bellingham, WA 2010) 75693A. [pdf]

Hyunmin Kim, Tatyana Sheps, David K. Taggart, Philip G. Collins, Reginald M. Penner, and Eric O. Potma, "Coherent anti-Stokes generation from single nanostructures", Proc. SPIE 7183, 718312 1-8 (2009). [pdf]

Tommaso Baldacchini, Max Zimmerley, Eric O. Potma, and Ruben Zadoyan, "Chemical mapping of three-dimensional microstructures fabricated by two-photon polymerization using CARS microscopy", Proc. SPIE 7201, 72010Q1-Q10 (2009) [pdf]

Max Zimmerley, Hyunmin Kim, Desiré Whitmore, Vishnu Vardhan Krishnamachari, Carole Hayakawa, Bernard Choi, Vasan Venugopalan and Eric O. Potma, "Making CARS better", Proc. SPIE 6853, 68530S1-S8 (2008) [pdf]

Book Chapters

Eric O. Potma and Shaul Mukamel, "Theory of Coherent Raman Scattering", in Coherent Raman Scattering Microscopy, J. X. Cheng and X. S. Xie (Eds.), CRC Press (2013). [link]

Eric O. Potma, X. Sunney Xie, Andreas Volkmer, and Ji-Xin Cheng, "Coherent Raman Scattering under Tightly Focused Conditions ", in Coherent Raman Scattering Microscopy, J. X. Cheng and X. S. Xie (Eds.), CRC Press (2013). [link]

Gangjun Liu, Mihaela Balu, Zhongping Chen, and Eric O. Potma, "Miniature Coherent Raman Probes for in vivo Biomedical Imaging ", in Coherent Raman Scattering Microscopy, J. X. Cheng and X. S. Xie (Eds.), CRC Press (2013). [link]

Varun Raghunathan, Hyunmin Kim, Stephan Stranick, and Eric O. Potma, "CRS with alternative beam profiles", in Coherent Raman Scattering Microscopy, J. X. Cheng and X. S. Xie (Eds.), CRC Press (2013). [link]

Eric O. Potma, "Tissue imaging with coherent anti-Stokes Raman scattering microscopy", in Vibrational Spectroscopic Imaging for Biomedical Applications, S. Gokulakrishnan (Ed.), McGraw Hill (2010). [link]

Eric O. Potma and Vishnu V. Krishnamachari, "Imaging with Phase Sensitive Narrowband Nonlinear Microscopy", in Biochemical Applications of Nonlinear Optical Spectroscopy, V. Yakovlev (Ed.), CRC Press (2009). [link]

Eric O. Potma and X. Sunney Xie, "Theory of Spontaneous and Coherent Raman Scattering" in Handbook of Biological Nonlinear Optical Microscopy, Peter So and Barry R. Masters (Eds.), Oxford University Press, pp. 164-185 (2008). [link]

Eric O. Potma and X. Sunney Xie, "Coherent anti-Stokes Raman Scattering Microscopy: Instrumentation and Applications" in Handbook of Biological Nonlinear Optical Microscopy, Peter So and Barry R. Masters (Eds.), Oxford University Press, pp. 412-434 (2008). [link]

Feature articles

Bernd Saegmuller, "Good Vibrations", reSOLUTION, No. 10 (2011). [pdf]

Rajendrani Mukhopadhyay, "CARS speeds up hair analysis", Chemistry World, August 2009 [link]

Tommaso Baldacchini and Ruben Zadoyan, "CARS peers deep into microstructures", Laser Focus World 50(5), May 2009. [link]

Eric O. Potma, "Improving contrast of the nonlinear microscope", SPIE Newsroom, January 2008. [link]

Eric O. Potma, CARS tutorial for students.

 

Previous Publications

Peer reviewed journal publications

Xiaolin Nan, Eric O. Potma and X. Sunney Xie, "Nonperturbative chemical imaging of organelle transport in living cells with coherent anti-Stokes Raman scattering microscopy", Biophys. J. 91(2), 728-735 (2006). [pdf]

Eric O. Potma, Conor L. Evans and X. Sunney Xie, "Heterodyne coherent anti-Stokes Raman scattering (CARS) imaging", Opt. Lett. 31, 241-243 (2006). [pdf]

Conor L. Evans, Eric O. Potma, Mehron Puoris'haag, Daniel Cote, Charles Lin and X. Sunney Xie, "Chemical imaging of tissue in vivo with video-rate coherent anti-Stokes Raman scattering (CARS) microscopy", Proc. Natl. Acad Sci. USA 102, 16807-16812 (2005). [pdf]

Eric O. Potma and X. Sunney Xie, "Direct visualization of lipid phase segregation in single lipid bilayers with coherent anti-Stokes Raman scattering (CARS) microscopy", ChemPhysChem 6 , 77-79 (2005). [pdf]

Conor Evans, Eric O. Potma and X. Sunney Xie, "Coherent anti-Stokes Raman scattering (CARS) spectral interferometry: Determination of the real and imaginary components of the nonlinear susceptibility for vibrational microscopy", Opt. Lett. 29 , 2923 (2004). [pdf]

Eric O. Potma , X. Sunney Xie, Ligia Muntean, Jan Preusser, David Jones, Jun Ye, Stephen R. Leone; William D. Hinsberg and Wolfgang Schade, "Chemical imaging of photoresists with coherent anti-Stokes Raman scattering (CARS) microscopy", J. Phys. Chem. B 108 , 1296 (2004).

Eric O. Potma and X. Sunney Xie, "Detection of single lipid bilayers with coherent anti-Stokes Raman scattering (CARS) microscopy," J. Raman Spectrosc. 34 , 642 (2003).

Eric O. Potma , Conor Evans, X. Sunney Xie, R. Jason Jones and Jun Ye, "Picosecond-pulse amplification with an external passive optical cavity", Opt. Lett. 28 , 1835 (2003).

Jixin Cheng, Eric O. Potma and X. Sunney Xie, "Coherent anti-Stokes Raman scattering correlation spectroscopy: Probing dynamical processes with chemical selectivity", J. Phys. Chem. A 106 , 8561 (2002).

David J. Jones, Eric O. Potma , Jixin Cheng, Bernd Burfeindt, Yang Pang, Jun Ye and X. Sunney Xie , "Synchronization of two-passively mode-locked, ps lasers within 20 fs for coherent anti-Stokes Raman scattering microscopy", Rev. Sci. Inst. 73 , 2843-2848 (2002).

Eric O. Potma , David. J. Jones, Jixin Cheng, X. Sunney Xie and Jun Ye, "High sensitivity coherent anti-Stokes Raman scattering microscopy with two tightly synchronized picosecond lasers", Opt. Lett. 27 , 1168-1170 (2002).

E. P. Reeves, H. Lu, H. L. Jacobs, C. G. M. Messina, S. Bolsover, G. Gabella, E. O. Potma , A, Warley, J. Roes and A. W. Segal, "Killing activity of neutrophils in mediated through activation of proteases by K + flux", Nature 416 , 291-297 (2002).

Eric O. Potma , Wim P. de Boeij, Leonard Bosgraaf, Jeroen Roelofs, Peter J. M. van Haastert and Douwe A. Wiersma, "Reduced protein diffusion rate by cytoskeleton in vegetative and polarized Dictyostelium cells", Biophys. J. 81 , 2010-2019 (2001).

Eric O. Potma , Wim P. de Boeij and Douwe A. Wiersma, "Femtosecond dynamics of intracellular water probed with nonlinear optical Kerr effect microspectroscopy", Biophys. J. 80, 3019-3024 (2001).

Eric O. Potma , Wim P. de Boeij, Peter J. M. van Haastert and Douwe A. Wiersma, "Real-time visualization of intracellular hydrodynamics in single living cells", Proc. Natl. Acad. Sci. USA 98, 1577-1582 (2001).

Eric O. Potma , Wim P. de Boeij and Douwe A. Wiersma, "Nonlinear coherent four-wave mixing in optical microscopy", J. Opt. Soc. Am. B 17, 1678-1684 (2000).

Eric O. Potma , Wim P. de Boeij, Maxim S. Pshenichnikov and Douwe A. Wiersma, "A 30-fs, cavity-dumped optical parametric oscillator", Opt. Lett. 23, 1763-1765 (1998).

Eric O. Potma and Douwe A. Wiersma, "Exciton superradiance in aggregates: The effect of disorder, higher order exciton-phonon coupling and dimensionality", J. Chem. Phys. 108, 4894-4903 (1998).

Published Conference Proceedings

Ji-Xin Cheng, Eric O. Potma and Sunney X. Xie, "Recent advances on Coherent anti-Stokes Raman scattering (CARS) microscopy", Proc. SPIE 4620, 248-258 (2002).

David J. Jones, Eric O. Potma, Ji-Xin Cheng, Jun Ye and X. Sunney Xie, "Coherent anti-Stokes Raman scattering microscopy with near-infrared ps pulses synchronized within 20 fs", in Ultrafast Phenomena XIII, R.D. Miller, M.M. Murnane, N.F. Scherer and A.M. Weiner (Eds.), Springer Verlag, Berlin, 184-186 (2002).

Eric O. Potma, Wim P. De Boeij and Douwe A. Wiersma, "Intracellular water diffusion probed by femtosecond nonlinear CARS microscopy", in Ultrafast Phenomena XII, T. Elsaessar, S. Mukamel, M.M. Murnane and N.F. Scherer (Eds.), Springer Verlag, Berlin, 251-255 (2000).

Book chapters

X. Sunney Xie, JiXin Cheng and Eric O. Potma, "Coherent anti-Stokes Raman Scattering Microscopy" in Handbook of Biological Confocal Microscopy, 2nd edition, James Pawley (Ed.), Springer Science, New York (2006)

Feature articles

K. Ross, "Following Cellular Traffick with CARS", Analytical Chemistry 78, 6701 (2006). [pdf]

K. Robinson, "CARS Microscope Designed for Video-rate Chemical Imaging", Biophotonics International 13, 32-34 (2006). [pdf]

C. M. Henry. "Imaging Lipids", Chemical & Engineering News 83, 36-37 (2005). [pdf]

Eric O. Potma and X. Sunney Xie, "CARS for Biology and Medicine", Optics and Photonics News 15, 40-45 (2004). [pdf]

Eric O. Potma, Wim P. de Boeij en Douwe A. Wiersma, ”Ultrafast water motions in cells probed with a femtosecond optical microscope”, Optics & Photonics News 12, p16 (2001)

         

Potma Labs, Department of Chemistry, Natural Sciences II, University of California, Irvine, CA 92697