154 papers · 1984–2025
Publications
Every paper from the group. Search by title, author, journal or PDB code.
2025
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A β-hairpin Peptide Derived from Aβ Forms Different Oligomers in the Crystal State and in Aqueous Solution
Org. Biomol. Chem. 2025, 23, 3881-3893.
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Potent Analogues of Clovibactin from Commerically Available Amino Acid Building Blocks
J. Org. Chem. 2025, 90, 5, 2132-2136.
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Using solution-phase NMR spectroscopy to study the folding and supramolecular assembly of conformationally constrained β-sheet peptides
Meth. Enzymol. 2025, 723, 477-509.
Preprint: Zhu, J.; Nowick, J. S. ChemRxiv, doi: 10.26434/chemrxiv-2025-d9pxp
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Vancomycin–Teixobactin Conjugates
J. Am. Chem. Soc. 2025, 147, 8, 6343-6348.
2024
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A turn for the worse: Aβ-hairpins in Alzheimer's disease
Bioorg. Med. Chem. 2024, 105, 117715.
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A β-Barrel-Like Tetramer Formed by a β-Hairpin Derived from Aβ
Chem. Sci. 2024, 15, 285-297.
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Generation and Study of Antibodies against Two Triangular Trimers Derived from Aβ
Pept. Sci. 2024, 116 (2), e24333.
contributed equally to this work.
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Investigation of Isobactin Analogs of Teixobactin
ACS Med. Chem. Lett. 2024, 15, 1136-1142.
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Structure-Activity Relationship Studies of the Peptide Antibiotic Clovibactin
J. Org. Chem. 2024, 89, 17, 12479-12484.
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Supramolecular Interactions of Teixobactin Analogues in the Crystal State
J. Org. Chem. 2024, 89 (7), 5104-5108.
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Teixobactin "Swapmers" With L Tail Stereochemistry Retain Antibiotic Activity
J. Org. Chem. 2024, 89, 20, 15325-15330.
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β-Hairpin Alignment Alters Oligomer Formation in Aβ-Derived Peptides
Biochemistry 2024, 63, 212-218.
2023
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Probing Differences among Aβ Oligomers with Two Triangular Trimers Derived from Aβ
Proc. Natl. Acad. Sci. U. S. A. 2023, 120, e2219216120.
contributed equally to this work.
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Synthesis and Stereochemical Determination of the Peptide Antibiotic Novo29
J. Org. Chem. 2023, 88, 2214-2220.
contributed equally to this work.
2022
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A Disulfide-Stabilized Aβ that Forms Dimers but Does Not Form Fibrils
Biochemistry 2022, 61, 4, 252-264.
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Elucidating the Oligomerization and Cellular Interactions of a Trimer Derived from Aβ through Fluorescence and Mass Spectrometric Studies
ACS Chem. Neurosci. 2022, 13, 2473-2482.
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Enantiomeric β-Sheet Peptides from Aβ Form Homochiral Pleated β-Sheets Rather Than Heterochiral Rippled β-Sheets
Chem. Sci. 2022, 13, 7739-7746 Cover Art.
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Isobactins: O-acyl isopeptide prodrugs of teixobactin and teixobactin derivatives
Chem. Sci. 2022, 13, 13110-13116.
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Macrocyclic Peptides Derived from Familial Alzheimer’s Disease Mutants Show Charge-Dependent Oligomeric Assembly and Toxicity
ACS Chem. Neurosci. 2022, 13, 714-720.
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Synthesis and Application of Fluorescent Teixobactin Analogs
Meth. Enzymol. 2022, 665, 233-258.
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Teixobactin Kills Bacteria by a Two-pronged Attack on the Cell Envelope
Nature 2022, 608, 390-396.
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Visualizing the Mode of Action and Supramolecular Assembly of Teixobactin Analogues in Bacillus subtilis
Chem. Sci. 2022, 13, 7747-7754. Cover Art.
2021
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A Cyclic Peptide Inhibitor of the SARS-CoV-2 Main Protease
Eur. J. Med. Chem. 2021, 221, 113530.
Preprint: Kreutzer, A. G.; Krumberger, M.; Parrocha, C. M. T.; Morris, M. A.; Guaglianone, G.; Nowick, J. S. bioRxiv doi: https://doi.org/10.1101/2020.08.03.234872
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An Improved Turn Structure for Inducing β-Hairpin Formation in Peptides
Angew. Chem. Int. Ed. 2021, 60, 22776-22782.
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An aza-Diels–Alder Route to Quinoline-Based Unnatural Amino Acids and Polypeptide Surrogates
RSC Adv. 2021, 11, 14132-14139.
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Exploring Amyloid Oligomers with Peptide Model Systems
Curr. Opin. Chem. Biol. 2021, 64, 106-115.
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Expression of N-Terminal Cysteine Aβ42 and Conjugation to Generate Fluorescent and Biotinylated Aβ42
Biochemistry 2021, 60, 1191-1200 Correction: Biochemistry 2021.
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Structure-Based Drug Design of an Inhibitor of the SARS-CoV-2 (COVID-19) Main Protease Using Free Software: A Tutorial for Students and Scientists
Eur. J. Med. Chem. 2021, 218, 11390.
contributed equally to this work.
Preprint: Zhang, S.; Krumberger, M.; Morris, M. A.; Parrocha, C. M. T.; Griffin, J. H.; Kreutzer, A. G.; Nowick J. S. ChemRxiv, doi: https://doi.org/10.26434/chemrxiv.12791954
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Synthesis and Study of Macrocyclic β-Hairpin Peptides for Investigating Amyloid Oligomers
Meth. Enzymol. 2021, 656, 123-168.
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Visualizing Teixobactin Supramolecular Assemblies and Cell Wall Damage in B. Subtilis Using CryoEM
ACS Omega 2021, 6, 27412-27417.
2020
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A Fluorescent Teixobactin Analogue
ACS Chem. Biol. 2020, 15, 1222-1231.
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Anaphylaxis Induced by Peptide Coupling Agents: Lessons Learned from Repeated Exposure to HATU, HBTU, & HCTU
J. Org. Chem. 2020, 85, 1764-1768.
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Design, Synthesis, and Study of Lactam and Ring-Expanded Analogues of Teixobactin
J. Org. Chem. 2020, 85, 1331-1339.
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Effects of N-Terminal Residues on the Assembly of Constrained β-Hairpin Peptides Derived from Aβ
J. Am. Chem. Soc. 2020, 142, 11593-11601.
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Interpreting Cubes in the X-Ray Crystallographic Structure of a Peptide Derived from Medin19–36
J. Am. Chem. Soc. 2020, 142, 15870-15875.
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Phenylalanine Mutation to Cyclohexylalanine Facilitates Triangular Trimer Formation by β-Hairpins Derived from Aβ
J. Am. Chem. Soc. 2020, 142, 20708-20716.
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Structural Interaction of Apolipoprotein A-I Mimetic Peptide with Amyloid-β Generates Toxic Hetero-oligomers
J. Mol. Biol. 2020, 432, 1020-1034.
2019
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Structure-Based Peptide Inhibitor Design of Amyloid-β Aggregation
Front. Mol. Neurosci. 2019, 12, 54.
2018
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An efficient method for the expression and purification of Aβ(M1–42)
Biochemistry 2018, 57, 3861-3866.
contributed equally to this work.
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Controlling the Oligomerization State of Aβ-derived Peptides with Light
J. Am. Chem. Soc. 2018, 140, 5842-5852.
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Effects of Charge and Hydrophobicity on the Oligomerization of Peptides Derived from IAPP
Bioorganic Med. Chem. 2018, 26, 1151-1156.
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Repurposing triphenylmethane dyes to bind to trimers derived from Aβ
J. Am. Chem. Soc. 2018, 140, 11745-11754. Correction: J. Am. Chem. Soc. 2018, 140, 15546-15546.
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X-ray Crystallographic Structure of a Teixobactin Derivative Reveals Amyloid-like Assembly
J. Am. Chem. Soc. 2018, 140, 14028-14032.
2017
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A Hexamer of a Peptide Derived from Aβ 16–36
Biochemistry 2017, 56, 6061-6071.
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A Tetramer Derived from Islet Amyloid Polypeptide
J. Org. Chem. 2017, 82, 7905-7912.
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Alanine Scan Reveals Modifiable Residues in Teixobactin
Chem. Commun. 2017, 53, 11357-11359.
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Stabilization, Assembly, and Toxicity of Trimers Derived from Aβ
J. Am. Chem. Soc. 2017, 139, 966-975.
DOIFree PDFPDFSupporting infoPDB 5SURPDB 5SUSPDB 5SUTPDB 5SUU
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Transmembrane Proteins: Amyloids Hidden in Plain Sight?
Biochemistry 2017, 56, 4735-4736.
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X-ray Crystallographic Structure of a Compact Dodecamer from a Peptide Derived from Aβ16–36
Org. Lett. 2017, 19, 3462-3465.
contributed equally to this work.
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X-ray Crystallographic Structure of a Giant Double-Walled Peptide Nanotube Formed by a Macrocyclic β-Sheet Containing Aβ16–22
J. Am. Chem. Soc. 2017, 139, 8102-8105.
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X-ray Crystallographic Structure of a Teixobactin Analogue Reveals Key Interactions of the Teixobactin Pharmacophore
Chem. Commun. 2017, 53, 2772-2775. cif.
2016
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Assembly of Peptides Derived from β-Sheet Regions of β-Amyloid
J. Am. Chem. Soc. 2016, 138, 13882-13890.
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Coassembly of Peptides Derived from β-Sheet Regions of β-Amyloid
J. Am. Chem. Soc. 2016, 138, 13891-13900.
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Square channels formed by a peptide derived from transthyretin
Chem. Sci. 2016, 7, 6946-6951.
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X-ray Crystallographic Structures of a Trimer, Dodecamer, and Annular Pore Formed by an Aβ17-36 β-Hairpin
J. Am. Chem. Soc. 2016, 138, 4634-4642.
2015
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Diversification of β-Augmentation Interactions between CDI Toxin/Immunity Proteins
J. Mol. Biol. 2015, 427, 3766-3784.
2014
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A Fibril-like Assembly of Oligomers of a Peptide Derived from β-Amyloid
J. Am. Chem. Soc. 2014, 136, 12682-12690.
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Polymorphism of Oligomers of a Peptide from β-Amyloid
J. Am. Chem. Soc. 2014, 136, 5432–5442.
2013
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A Hydrophobic Surface is Essential to Inhibit the Aggregation of a Tau-Protein-Derived Hexapeptide
J. Am. Chem. Soc. 2013, 135, 6846-6852.
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Mechanism of IAPP Amyloid Fibril Formation Involves an Intermediate with a Transient β-Sheet
Proc. Natl. Acad. Sci. U. S. A. 2013, 110, 19285-19290.
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Recipe for β-Sheets: Foldamers Containing Amyloidogenic Peptide Sequences
Eur. J. Org. Chem. 2013, 3523-3528.
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Structures of Oligomers of a Peptide from β-Amyloid
J. Am. Chem. Soc. 2013, 135, 12460-12467.
2012
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Heterodivalent Linked Macrocyclic β-Sheets with Enhanced Activity against Aβ Aggregation: Two Sites are Better than One
J. Am. Chem. Soc. 2012, 133, 14179-14184.
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Out-of-Register β-Sheets Suggest a Pathway to Toxic Amyloid Aggregates
Proc. Natl. Acad. Sci. U. S. A. 2012, 109, 20913-20918.
DOIFree PDFPDFSupporting infoPDB 4E0KPDB 4E0LPDB 4E0MPDB 4E0NPDB 4E0O
2011
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Giant Macrolactams Based on β-Sheet Peptides
J. Org. Chem. 2011, 76, 3166-3173.
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Macrocyclic β-Sheet Peptides that Inhibit the Aggregation of a Tau-Protein-Derived Hexapeptide
J. Am. Chem. Soc. 2011, 133, 3144-3157.
2010
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Nanometer-Scale Water-Soluble Macrocycles from Nanometer-Sized Amino Acids
J. Org. Chem. 2010, 75, 1822-1830.
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X-ray Crystallographic Structure of an Artificial β-Sheet Dimer
J. Am. Chem. Soc. 2010, 132, 11622-11628.
2009
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A New Artificial β-Sheet that Dimerizes through Parallel β-Sheet Interactions
Org. Lett. 2009, 11, 1003-1006.
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Use of Disulfide "Staples" To Stabilize β-Sheet Quaternary Structure
Org. Lett. 2009, 11, 3000-3003.
2008
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Artificial β-Sheets: Chemical Models of β-Sheets
Curr. Opin. Chem. Biol. 2008, 12, 722-729.
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Exploring β-Sheet Structure and Interactions with Chemical Model Systems
Acc. Chem. Res. 2008, 41, 1319-1330.
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Functionalized Analogues of an Unnatural Amino Acid that Mimics a Tripeptide β-Strand
Org. Lett. 2008, 10, 5293-5296.
2007
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A New Class of Macrocyclic Receptors from iota-Peptides
J. Am. Chem. Soc. 2007, 129, 1486-1487.
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An Artificial β-Sheet that Dimerizes through Parallel β-Sheet Interactions
J. Am. Chem. Soc. 2007, 129, 13043-13048.
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Macrocyclic β-Sheet Peptides that Mimic Protein Quaternary Structure through Intermolecular β-Sheet Interactions
J. Am. Chem. Soc. 2007, 129, 5558-5569.
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Nanometer-Sized Amino Acids for the Synthesis of Nanometer-Scale Water-Soluble Molecular Rods of Precise Length
J. Am. Chem. Soc. 2007, 129, 7272-7273.
2006
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What I Have Learned by Using Chemical Model Systems to Study Biomolecular Structure and Interactions
Org. Biomol. Chem. 2006, 4, 3869-3885.
2005
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The Absence of Favorable Aromatic Interactions between β-Sheet Peptides
J. Am. Chem. Soc. 2005, 127, 9998-9999.
2004
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Enantioselective Molecular Recognition between β-Sheets
J. Am. Chem. Soc. 2004, 126, 3062-3063.
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ICBS: A Database of Protein-Protein Interactions Mediated by β-Sheet Formation
Bioinformatics 2004, 20, 2767-2777.
2003
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A New Turn Structure for the Formation of β-Hairpins in Peptides
J. Am. Chem. Soc. 2003, 125, 876-877.
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A Ribozyme with Michaelase Activity: Synthesis of the Substrate Precursors
Bioorg. Med. Chem. 2003, 11, 235-249.
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DSA: A New Internal Standard for NMR Studies in Aqueous Solution
Org. Lett. 2003, 5, 3511-3513.
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Sequence-Selective Molecular Recognition Between β-Sheets
Angew. Chem., Int. Ed. 2003, 42, 1765-1768.
2002
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An Unnatural Amino Acid that Induces β-Sheet Folding and Interaction in Peptides
J. Am. Chem. Soc. 2002, 124, 4972-4973.
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Methylglyoxal Synthetase, enol-Pyruvaldehde, Glutathione, and the Glyoxalase System
J. Am. Chem. Soc. 2002, 124, 13047-13052.
2001
2000
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An Unnatural Amino Acid that Mimics a Tripeptide β-Strand and Forms β-Sheetlike Hydrogen-Bonded Dimers
J. Am. Chem. Soc. 2000, 122, 7654-7661.
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Fmoc*: A More Soluble Analogue of the 9-Fluorenylmethoxycarbonyl Protecting Group
J. Org. Chem. 2000, 65, 3858-3860.
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Synthesis of Amino Acid Ester Isocyanates: Methyl (S)-2-Isocyanato-3-phenylpropanoate
Org. Synth. 2000, 78, 220-224.
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Synthesis, Incorporation Efficiency, and Stability of Disulfide Bridged Functional Groups at RNA 5'-Ends
Bioorg. Med. Chem. 2000, 8, 1317-1329.
1999
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A Peptide/Oligourea/Azapeptide Hybrid That Adopts a Hairpin Turn
J. Org. Chem. 1999, 64, 276-281.
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Designed Molecules that Fold to Mimic Protein Secondary Structures
Curr. Opin. Chem. Biol. 1999, 3, 714-723.
1998
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Design and Synthesis of a Transition State Analog for the Diels-Alder Reaction
Bioorg. Med. Chem. 1998, 6, 1421-1428.
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The Alginate Demonstration: Polymers, Food Science, and Ion Exchange
J. Chem. Educ. 1998, 75, 1430-1431.
1997
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An Artificial Antiparallel β-Sheet Containing a New Peptidomimetic Template
J. Org. Chem. 1997, 62, 7906-7907.
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An Extended β-Strand Mimic for a Larger Artificial β-Sheet
J. Am. Chem. Soc. 1997, 119, 5413-5424.
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Model Behaviour
Chem. Br. 1997, 33(12), 36-39.
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The Propensities of Amino Acids to Form Parallel β-Sheets
J. Am. Chem. Soc. 1997, 119, 10903-10908.
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Unnatural Oligomers and Oligomer Libraries
Current Opinion in Chemical Biology 1997, 1, 120-129.
1996
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A Coordinated Chemistry Outreach Program that Reaches Thousands of High School Students
J. Chem. Educ. 1996, 73, 762-764.
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An Artificial β-Sheet Comprising a Molecular Scaffold, a β-Strand Mimic, and a Peptide Strand
J. Am. Chem. Soc. 1996, 118, 2764-2765.
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Synthesis of Peptide Isocyanates and Isothiocyanates
J. Org. Chem. 1996, 61, 3929-3934. Addition: J. Org. Chem. 1998, 63, 9144.
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Triurea Derivatives of Diethylenetriamine as Potential Templates for the Formation of Artificial β-Sheets
J. Am. Chem. Soc. 1996, 118, 1066-1072.
1995
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A Novel Hydrogen-Bonded Dimer Containing a Sixteen-Membered Ring
J. Org. Chem. 1995, 60, 1888.
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Molecular Scaffolds. 2. Intramolecular Hydrogen Bonding in 1,2-Diaminoethane Diureas
J. Am. Chem. Soc. 1995, 117, 89-99.
1994
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Molecular Recognition Between Uncharged Molecules in Aqueous Micelles
J. Am. Chem. Soc. 1994, 116, 3285-3289.
1993
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Molecular Recognition in Micelles: The Roles of Hydrogen Bonding and Hydrophobicity in Adenine-Thymine Base-Pairing in SDS Micelles
J. Am. Chem. Soc. 1993, 115, 7636-7644.
1992
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An Improved Method for the Synthesis of Enantiomerically Pure Amino Acid Ester Isocyanates
J. Org. Chem. 1992, 57, 7364-7366.
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Molecular Recognition in Aqueous Micellar Solution: Adenine-Thymine Base-Pairing in SDS Micelles
J. Am. Chem. Soc. 1992, 114, 1107-1108.
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Molecular Scaffolds I. Intramolecular Hydrogen Bonding in a Family of Di- and Triureas
J. Org. Chem. 1992, 57, 3763-3765.
1991
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A Practical and Efficient Method for the Synthesis of β-Lactones
J. Org. Chem. 1991, 56, 1176.
1990
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Convergent Functional Groups. 9. Complexation in New Molecular Clefts
J. Am. Chem. Soc. 1990, 112, 8902.
1989
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Application of (α-Phosphonoacyl)silane Reagents to the Synthesis of α,β-Unsaturated Acylsilanes
J. Org. Chem. 1989, 54, 2798.
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Synthesis of Conjugated Optically Active Polymetallocenes
J. Macromol. Sci., Chem. 1989, A26, 309.
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The M.I.T. Chemistry Outreach Program: Graduate Students Presenting Chemistry to High School Students
J. Chem. Educ. 1989, 66, 668.
1988
1984
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